BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB005F11LP1|AL425412
(857 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig924 1593 0.0
>3x_Contig924
Length = 2007
Score = 1593 bits (788), Expect = 0.0
Identities = 830/858 (96%), Gaps = 1/858 (0%)
Strand = Plus / Plus
Query: 1 gatcatactaagaaacctaataatccaattgaagccatagcatataccattgatacttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gatcatactaagaaacctaataatccaattgaagccatagcatataccattgatacttca 297
Query: 61 ccgaatactggttttttagaataagttgatacgatatgtgaaataataccgaatccagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccgaatactggttttttagaataagttgatacgatatgtgaaataataccgaatccagga 357
Query: 121 ataattaaaatataaacttcggggtgaccaaagaatccaaatctaaataatatattatct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 ataattaaaatataaacttcggggtgaccaaagaatccaaatctaaataatatattatct 417
Query: 181 tttccccaaatattatttttgataatagcacgggtagactctataatatatatctcatat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tttccccaaatattatttttgataatagcacgggtagactctataatatatatctcatat 477
Query: 241 ataatatatgaccttattattaataagtgattccgactgtacattaagcaatattattat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ataatatatgaccttattattaataagtgattccgactgtacattaagcaatattattat 537
Query: 301 atcacccattggtgaagcagtctgtagcgatcagaatatataattatatatattatavcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 538 atcacccattggtgaagcagtctgtagcgatcagaatatataattatatatattataacc 597
Query: 361 gacggtctaaatctgagaaattgttgaccgtaccaccaatgttgcattatataatatata 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gacggtctaaatctgagaaattgttgaccgtaccaccaatgttgcattatataatatata 657
Query: 421 tatvatrctvgasrrkvgtatatttvtctcttctccccatatcttcttatcagcttagct 480
||| || || || |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 658 tataatactagaaaatagtatatttatctcttctccccatatcttcttatcagcttagct 717
Query: 481 gggaagaagatatggggggggtattaaaaaaggtrratcccttggatggtgtccgaataa 540
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 718 gggaagaagatatggggggggtattaaaaaaggtaaatcccttggatggtgtccgaataa 777
Query: 541 gagaataataaatatttmgtctcttaatttatatatatatstbasgagagatataatctt 600
||||||||||||||||| |||||||||||||||||||||| | | |||||||||||||||
Sbjct: 778 gagaataataaatatttagtctcttaatttatatatatatattaagagagatataatctt 837
Query: 601 tttvtttttcatatcaacattgttatatcttttctaattaacttaagttaaactatttcc 660
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 tttatttttcatatcaacattgttatatcttttctaattaacttaagttaaactatttcc 897
Query: 661 tttgtttcaatattttttatttatactaataaaatatgattatttattaattwattccct 720
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 898 tttgtttcaatattttttatttatactaataaaatatgattatttattaattaattccct 957
Query: 721 bcbckactcacccchccctttatkagggtcgggkgatgtcgcgcaggg-ttagatatttt 779
| | |||||||| |||||||| ||||||||| |||||||||||||| |||||||||||
Sbjct: 958 gcgcgactcacccaaccctttatgagggtcgggtgatgtcgcgcagggtttagatatttt 1017
Query: 780 tttaatatataatttttkttcttcatttaaaggkttattttgtttataataatttattac 839
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1018 tttaatatataatttttgttcttcatttaaaggtttattttgtttataataatttattac 1077
Query: 840 atgaataaatttatctaa 857
||||||||||||||||||
Sbjct: 1078 atgaataaatttatctaa 1095
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.40 0.714 1.33
Gapped
Lambda K H
1.40 0.714 1.33
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,365
Number of Sequences: 1807
Number of extensions: 11365
Number of successful extensions: 362
Number of sequences better than 1.0e-20: 1
length of query: 857
length of database: 10,358,551
effective HSP length: 16
effective length of query: 841
effective length of database: 10,329,639
effective search space: 8687226399
effective search space used: 8687226399
T: 0
A: 40
X1: 5 (10.1 bits)
X2: 14 (28.3 bits)
S1: 12 (24.7 bits)
S2: 49 (99.6 bits)